Egypt is rich with many museums, in fact there are more than 34 museums all over Egypt, and they are divided into:

1- Egypt National Museum:

They usually have collections from a specific period, or part of the Ancient Egyptian history

Such as:

The Egyptian Museum
The Coptic Museum
The Islamic Museum
The National Museum of Alexadria
The Nubian museum

2- Local Museum:

They are mostly located in the capital of a local province. They usually have a collection of antiquities that have been found within the borders of the area

Such as:

Elephantine Island Museum
Luxor Museum
Museum of Mellowi
Menia Museum
Beni Seuf Museum
New Valley Museum
Ismalia Museum:
Port Said Museum:
Tanta Museum

3- Contemporary Museums:

They exhibit relics from the era of Mohamed Ali and his family

Such as:

Mohamed Ali Basha Museum in Shoubra
Prince Mohamed Ali at Manial palace:
Museum of Gayer Anderson
Elguhara Palace Museum
Royal Chariots Museum at the Citadel
Royal Chariots Museum at Boulak
Police Museum
Royal jewellery Museum at Alexandria

4- Site Museums:

They are usually attached to specific sites, and are small in size. They exhibit the artefacts that have been found around the archaeological site, instead of keeping the finds in a local antiquities store

Such as:

Tanis Museum (San EL Hagar)
Karnis Museum (Kom Oushim)
Solar boat Museum (southern side of Khufu's Pyramid)

5- Theme and other miscellaneous Museums:

These museums were built to exhibit a particular type of artefact

Such as:

The Nubian Museum
The Maritime Museum 
The Military Museum.
Agricultural Museum
Islamic Pottery Museum